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  "Description": "Provides an 'R' interface to the 'C-TOOL' soil carbon\nturnover model for simulating soil organic carbon dynamics in\nagricultural systems. The package supports the definition of\ncarbon inputs, management schedules, soil parameters, and\ntemperature forcing, and includes tools for scenario analysis\nand calibration of selected model parameters against observed\nsoil organic carbon stocks. The 'C-TOOL' model and related\nmodelling framework are described by Petersen et al. (2002)\n<doi:10.1016/S0304-3800(02)00034-0>, Petersen et al. (2005)\n<doi:10.1016/j.soilbio.2004.08.006>, Petersen et al. (2013)\n<doi:10.1016/j.jclepro.2013.03.007>, and Taghizadeh-Toosi et\nal. (2014) <doi:10.1016/j.ecolmodel.2014.08.016>. Further\napplications and developments are described by Taghizadeh-Toosi\net al. (2016) <doi:10.1016/j.agsy.2016.03.004>, Keel et al.\n(2017) <doi:10.1111/ejss.12454>, Taghizadeh-Toosi et al. (2020)\n<doi:10.1007/s11104-020-04500-9>, and Taghizadeh-Toosi and\nChristensen (2021) <doi:10.1038/s41598-021-97744-z>.",
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