Package: rCTOOL 3.1.0

rCTOOL: Soil Organic Carbon Turnover Modelling with 'C-TOOL'

Provides an 'R' interface to the 'C-TOOL' soil carbon turnover model for simulating soil organic carbon dynamics in agricultural systems. The package supports the definition of carbon inputs, management schedules, soil parameters, and temperature forcing, and includes tools for scenario analysis and calibration of selected model parameters against observed soil organic carbon stocks. The 'C-TOOL' model and related modelling framework are described by Petersen et al. (2002) <doi:10.1016/S0304-3800(02)00034-0>, Petersen et al. (2005) <doi:10.1016/j.soilbio.2004.08.006>, Petersen et al. (2013) <doi:10.1016/j.jclepro.2013.03.007>, and Taghizadeh-Toosi et al. (2014) <doi:10.1016/j.ecolmodel.2014.08.016>. Further applications and developments are described by Taghizadeh-Toosi et al. (2016) <doi:10.1016/j.agsy.2016.03.004>, Keel et al. (2017) <doi:10.1111/ejss.12454>, Taghizadeh-Toosi et al. (2020) <doi:10.1007/s11104-020-04500-9>, and Taghizadeh-Toosi and Christensen (2021) <doi:10.1038/s41598-021-97744-z>.

Authors:Evandro H. Figueiredo Moura da Silva [aut], João Serra [aut], Franca Giannini-Kurina [aut, cre]

rCTOOL_3.1.0.tar.gz
rCTOOL_3.1.0.zip(r-4.7)rCTOOL_3.1.0.zip(r-4.6)rCTOOL_3.1.0.zip(r-4.5)
rCTOOL_3.1.0.tgz(r-4.6-any)rCTOOL_3.1.0.tgz(r-4.5-any)
rCTOOL_3.1.0.tar.gz(r-4.7-any)rCTOOL_3.1.0.tar.gz(r-4.6-any)
rCTOOL_3.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
rCTOOL/json (API)

# Install 'rCTOOL' in R:
install.packages('rCTOOL', repos = c('https://francagiannini.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.74 score 11 scripts 25 exports 1 dependencies

Last updated from:10cf1b8717. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK130
source / vignettesOK182
linux-release-x86_64OK127
macos-release-arm64OK135
macos-oldrel-arm64OK128
windows-develOK76
windows-releaseOK81
windows-oldrelOK74
wasm-releaseOK132

Exports:check_balancectool_calibration_metricsdefine_Cinputsdefine_physical_boundariesdefine_timeperiodexport_management_templateFOM_sub_calculationsFOM_top_calculationsHUM_sub_calculationsHUM_top_calculationsinitialize_soil_poolsmanagement_configROM_sub_calculationsROM_top_calculationsrun_ctoolset_monthly_temperature_dataset_monthly_temperature_data_historical_amplitudesoil_configturnoverupdate_monthly_FOM_subupdate_monthly_FOM_topupdate_monthly_HUM_subupdate_monthly_HUM_topupdate_monthly_ROM_subupdate_monthly_ROM_top

Dependencies:data.table

Readme and manuals

Help Manual

Help pageTopics
.clean_monthly_allocations.clean_monthly_allocations
.decay.decay
.soil_temp.soil_temp
.temp_coef.temp_coef
Basic rCTOOL example datasetbasic_example
check_balancecheck_balance
Calibrate C-TOOL using observed topsoil SOCctool_calibrate
Calculate C-TOOL calibration metricsctool_calibration_metrics
define_Cinputsdefine_Cinputs
define_physical_boundariesdefine_physical_boundaries
define_timeperioddefine_timeperiod
export_management_templateexport_management_template
FOM_sub_calculationsFOM_sub_calculations
FOM_top_calculationsFOM_top_calculations
HUM_sub_calculationsHUM_sub_calculations
HUM_top_calculationsHUM_top_calculations
initialize_soil_poolsinitialize_soil_pools
management_configmanagement_config
ROM_sub_calculationsROM_sub_calculations
ROM_top_calculationsROM_top_calculations
run_ctoolrun_ctool
rCTOOL scenario example datasetscenario
rCTOOL scenario temperature datasetscenario_temperature
set_monthly_temperature_dataset_monthly_temperature_data
set_monthly_temperature_data_historical_amplitudeset_monthly_temperature_data_historical_amplitude
soil_configsoil_config
soil_pool_decompositionsoil_pool_decomposition
turnoverturnover
turnover_betaturnover_beta
update_monthly_FOM_subupdate_monthly_FOM_sub
update_monthly_FOM_topupdate_monthly_FOM_top
update_monthly_HUM_subupdate_monthly_HUM_sub
update_monthly_HUM_topupdate_monthly_HUM_top
update_monthly_ROM_subupdate_monthly_ROM_sub
update_monthly_ROM_topupdate_monthly_ROM_top